Analysis

In addition to development of custom analysis pipelines and assistance with data interpretation, the Core team provides comprehensive standard and custom analysis of the following widely used high-throughput sequencing ("Seq") applications:

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• RNA-seq (bulk and single-cell)
• miRNA-seq
• ATAC-seq
• ChIP-seq
• Bisulfite-seq
• DNA-seq (Whole Genome/Exome)
• CLASH-seq
• Hi-C-seq

Sequencing Recommendations

Sequencing requirements are typically determined based on the application, size of the reference genome, and project specific objectives.  While the table below lists some guidelines based on published literature and best practices of the scientific community, experiment design may be supplemented with information from relevant literature and/or consulting with the Core team.

Sample Submission

Ready to submit samples to the TCC NGS Analysis Core for processing?  Please download and complete the TCC NGS Analysis Core Sample Submission Form.

Platforms

The Core team has experience processing data from the following sequencing platforms: